Jaimers, Sorry you are having this. It could be the cipro, but either way I would visit an orthopedist.
Jonathon, I switched to aerobic dance, Zumba and similar stuff, because 2-3 months into jogging, I could tell my bad knee was getting worse. I had surgery almost 15 yrs ago to repair torn meniscus and drain a cyst, and it worked but not to the point where I can be a runner. That said, the cardio of dance class made it so I was able to run a 4 mile race in less than 40 minutes last summer with no running training. So I really think the cardio workout of dance is a great option.
There are dudes in my gym's dance class too...